add PIP_BREAK_SYSTEM_PACKAGES env

* Use --no-tablespaces in mysqldump
* Dump to 0.7.0
* pin docker version
* Include missing packages in setup.py

.readthedocs.yaml

@@ -0,0 +1,24 @@
+# Read the Docs configuration file for Sphinx projects
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Set the OS, Python version and other tools you might need
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.10"
+
+# Build documentation in the "docs/" directory with Sphinx
+sphinx:
+  configuration: docs/conf.py
+
+# Optionally build your docs in additional formats such as PDF and ePub
+# formats:
+#   - pdf
+#   - epub
+
+python:
+  install:
+    - requirements: docs/requirements.txt

docker-compose.yaml

@@ -4,7 +4,7 @@ services:
     build: ./src
     env_file:
       - restic_compose_backup.env
-      - alerts.env
+      # - alerts.env
     labels:
       restic-compose-backup.volumes: true
       restic-compose-backup.volumes.include: 'src'
@@ -32,7 +32,7 @@ services:
       - SOME_VALUE=test
       - ANOTHER_VALUE=1
 
-  mysql:
+  mysql5:
     image: mysql:5
     labels:
       restic-compose-backup.mysql: true
@@ -42,7 +42,19 @@ services:
       - MYSQL_USER=myuser
       - MYSQL_PASSWORD=mypassword
     volumes:
-      - mysqldata:/var/lib/mysql
+      - mysqldata5:/var/lib/mysql
+
+  mysql8:
+    image: mysql:8
+    labels:
+      restic-compose-backup.mysql: true
+    environment:
+      - MYSQL_ROOT_PASSWORD=my-secret-pw
+      - MYSQL_DATABASE=mydb
+      - MYSQL_USER=myuser
+      - MYSQL_PASSWORD=mypassword
+    volumes:
+      - mysqldata8:/var/lib/mysql
 
   mariadb:
     image: mariadb:10
@@ -68,7 +80,8 @@ services:
       - pgdata:/var/lib/postgresql/data
 
 volumes:
-  mysqldata:
+  mysqldata5:
+  mysqldata8:
   mariadbdata:
   pgdata:
 

src/Dockerfile

@@ -1,6 +1,13 @@
-FROM restic/restic:0.9.6
+FROM restic/restic:0.17.3
 
-RUN apk update && apk add python3 dcron mariadb-client postgresql-client
+ENV PIP_BREAK_SYSTEM_PACKAGES 1
+
+RUN apk update && apk add python3 \ 
+    py3-pip \
+    dcron \
+    mariadb-client \
+    postgresql-client \
+    mariadb-connector-c-dev 
 
 ADD . /restic-compose-backup
 WORKDIR /restic-compose-backup

src/entrypoint.sh

@@ -1,7 +1,7 @@
 #!/bin/sh
 
 # Dump all env vars so we can source them in cron jobs
-printenv | sed 's/^\(.*\)$/export \1/g' > /env.sh
+rcb dump-env > /env.sh
 
 # Write crontab
 rcb crontab > crontab

src/restic_compose_backup/__init__.py

@@ -1 +1 @@
-__version__ = '0.6.0'
+__version__ = '0.7.1'

src/restic_compose_backup/cli.py

@@ -51,6 +51,9 @@ def main():
     elif args.action == "crontab":
         crontab(config)
 
+    elif args.action == "dump-env":
+        dump_env()
+
     # Random test stuff here
     elif args.action == "test":
         nodes = utils.get_swarm_nodes()
@@ -105,10 +108,10 @@ def status(config, containers):
             logger.info(
                 ' - %s (is_ready=%s) -> %s',
                 instance.container_type,
-                ping == 0,
+                ping,
                 instance.backup_destination_path(),
             )
-            if ping != 0:
+            if not ping:
                 logger.error("Database '%s' in service %s cannot be reached",
                              instance.container_type, container.service_name)
 
@@ -290,6 +293,14 @@ def crontab(config):
     print(cron.generate_crontab(config))
 
 
+def dump_env():
+    """Dump all environment variables to a script that can be sourced from cron"""
+    print("#!/bin/bash")
+    print("# This file was generated by restic-compose-backup")
+    for key, value in os.environ.items():
+        print("export {}='{}'".format(key, value))
+
+
 def parse_args():
     parser = argparse.ArgumentParser(prog='restic_compose_backup')
     parser.add_argument(
@@ -303,6 +314,7 @@ def parse_args():
             'cleanup',
             'version',
             'crontab',
+            'dump-env',
             'test',
         ],
     )

src/restic_compose_backup/commands.py

@@ -1,7 +1,9 @@
 import logging
-from typing import List, Tuple
+from typing import List, Tuple, Union
 from subprocess import Popen, PIPE
 
+from restic_compose_backup import utils
+
 logger = logging.getLogger(__name__)
 
 
@@ -9,43 +11,54 @@ def test():
     return run(['ls', '/volumes'])
 
 
-def ping_mysql(host, port, username) -> int:
+def ping_mysql(container_id, host, port, username, password) -> int:
     """Check if the mysql is up and can be reached"""
-    return run([
+    return docker_exec(container_id, [
         'mysqladmin',
         'ping',
-        '--host',
-        host,
-        '--port',
-        port,
         '--user',
         username,
-    ])
+    ], environment={
+        'MYSQL_PWD': password
+    })
 
 
-def ping_mariadb(host, port, username) -> int:
+def ping_mariadb(container_id, host, port, username, password) -> int:
     """Check if the mariadb is up and can be reached"""
-    return run([
+    return docker_exec(container_id, [
         'mysqladmin',
         'ping',
-        '--host',
-        host,
-        '--port',
-        port,
         '--user',
         username,
-    ])
+    ], environment={
+        'MYSQL_PWD': password
+    })
 
 
-def ping_postgres(host, port, username, password) -> int:
+def ping_postgres(container_id, host, port, username, password) -> int:
     """Check if postgres can be reached"""
-    return run([
+    return docker_exec(container_id, [
         "pg_isready",
         f"--host={host}",
         f"--port={port}",
         f"--username={username}",
     ])
 
+def docker_exec(container_id: str, cmd: List[str], environment: Union[dict, list] = []) -> int:
+    """Execute a command within the given container"""
+    client = utils.docker_client()
+    logger.debug('docker exec inside %s: %s', container_id, ' '.join(cmd))
+    exit_code, (stdout, stderr) = client.containers.get(container_id).exec_run(cmd, demux=True, environment=environment)
+
+    if stdout:
+        log_std('stdout', stdout.decode(),
+                logging.DEBUG if exit_code == 0 else logging.ERROR)
+
+    if stderr:
+        log_std('stderr', stderr.decode(), logging.ERROR)
+
+    return exit_code
+
 
 def run(cmd: List[str]) -> int:
     """Run a command with parameters"""

src/restic_compose_backup/containers_db.py

@@ -25,34 +25,37 @@ class MariadbContainer(Container):
         """Check the availability of the service"""
         creds = self.get_credentials()
 
-        with utils.environment('MYSQL_PWD', creds['password']):
+        return commands.ping_mariadb(
-            return commands.ping_mariadb(
+            self.id,
-                creds['host'],
+            creds['host'],
-                creds['port'],
+            creds['port'],
-                creds['username'],
+            creds['username'],
-            )
+            creds['password']
+        ) == 0
 
     def dump_command(self) -> list:
         """list: create a dump command restic and use to send data through stdin"""
         creds = self.get_credentials()
         return [
             "mysqldump",
-            f"--host={creds['host']}",
-            f"--port={creds['port']}",
             f"--user={creds['username']}",
             "--all-databases",
+            "--no-tablespaces",
         ]
 
     def backup(self):
         config = Config()
         creds = self.get_credentials()
 
-        with utils.environment('MYSQL_PWD', creds['password']):
+        return restic.backup_from_stdin(
-            return restic.backup_from_stdin(
+            config.repository,
-                config.repository,
+            self.backup_destination_path(),
-                self.backup_destination_path(),
+            self.id,
-                self.dump_command(),
+            self.dump_command(),
-            )
+            environment={
+                'MYSQL_PWD': creds['password']
+            }
+        )
 
     def backup_destination_path(self) -> str:
         destination = Path("/databases")
@@ -84,34 +87,37 @@ class MysqlContainer(Container):
         """Check the availability of the service"""
         creds = self.get_credentials()
 
-        with utils.environment('MYSQL_PWD', creds['password']):
+        return commands.ping_mysql(
-            return commands.ping_mysql(
+            self.id,
-                creds['host'],
+            creds['host'],
-                creds['port'],
+            creds['port'],
-                creds['username'],
+            creds['username'],
-            )
+            creds['password']
+        ) == 0
 
     def dump_command(self) -> list:
         """list: create a dump command restic and use to send data through stdin"""
         creds = self.get_credentials()
         return [
             "mysqldump",
-            f"--host={creds['host']}",
-            f"--port={creds['port']}",
             f"--user={creds['username']}",
             "--all-databases",
+            "--no-tablespaces",
         ]
 
     def backup(self):
         config = Config()
         creds = self.get_credentials()
 
-        with utils.environment('MYSQL_PWD', creds['password']):
+        return restic.backup_from_stdin(
-            return restic.backup_from_stdin(
+            config.repository,
-                config.repository,
+            self.backup_destination_path(),
-                self.backup_destination_path(),
+            self.id,
-                self.dump_command(),
+            self.dump_command(),
-            )
+            environment={
+                "MYSQL_PWD": creds['password']
+            }
+        )
 
     def backup_destination_path(self) -> str:
         destination = Path("/databases")
@@ -144,11 +150,12 @@ class PostgresContainer(Container):
         """Check the availability of the service"""
         creds = self.get_credentials()
         return commands.ping_postgres(
+            self.id,
             creds['host'],
             creds['port'],
             creds['username'],
             creds['password'],
-        )
+        ) == 0
 
     def dump_command(self) -> list:
         """list: create a dump command restic and use to send data through stdin"""
@@ -156,22 +163,19 @@ class PostgresContainer(Container):
         creds = self.get_credentials()
         return [
             "pg_dump",
-            f"--host={creds['host']}",
-            f"--port={creds['port']}",
             f"--username={creds['username']}",
             creds['database'],
         ]
 
     def backup(self):
         config = Config()
-        creds = self.get_credentials()
 
-        with utils.environment('PGPASSWORD', creds['password']):
+        return restic.backup_from_stdin(
-            return restic.backup_from_stdin(
+            config.repository,
-                config.repository,
+            self.backup_destination_path(),
-                self.backup_destination_path(),
+            self.id,
-                self.dump_command(),
+            self.dump_command(),
-            )
+        )
 
     def backup_destination_path(self) -> str:
         destination = Path("/databases")

src/restic_compose_backup/restic.py

@@ -2,9 +2,10 @@
 Restic commands
 """
 import logging
-from typing import List, Tuple
+from typing import List, Tuple, Union
 from subprocess import Popen, PIPE
 from restic_compose_backup import commands
+from restic_compose_backup import utils
 
 logger = logging.getLogger(__name__)
 
@@ -27,9 +28,10 @@ def backup_files(repository: str, source='/volumes'):
     ]))
 
 
-def backup_from_stdin(repository: str, filename: str, source_command: List[str]):
+def backup_from_stdin(repository: str, filename: str, container_id: str,
+                      source_command: List[str], environment: Union[dict, list] = None):
     """
-    Backs up from stdin running the source_command passed in.
+    Backs up from stdin running the source_command passed in within the given container.
     It will appear in restic with the filename (including path) passed in.
     """
     dest_command = restic(repository, [
@@ -39,20 +41,43 @@ def backup_from_stdin(repository: str, filename: str, source_command: List[str])
         filename,
     ])
 
-    # pipe source command into dest command
+    client = utils.docker_client()
-    source_process = Popen(source_command, stdout=PIPE, bufsize=65536)
+
-    dest_process = Popen(dest_command, stdin=source_process.stdout, stdout=PIPE, stderr=PIPE, bufsize=65536)
+    logger.debug('docker exec inside %s: %s', container_id, ' '.join(source_command))
+
+    # Create and start source command inside the given container
+    handle = client.api.exec_create(container_id, source_command, environment=environment)
+    exec_id = handle["Id"]
+    stream = client.api.exec_start(exec_id, stream=True, demux=True)
+    source_stderr = ""
+
+    # Create the restic process to receive the output of the source command
+    dest_process = Popen(dest_command, stdin=PIPE, stdout=PIPE, stderr=PIPE, bufsize=65536)
+
+    # Send the ouptut of the source command over to restic in the chunks received
+    for stdout_chunk, stderr_chunk in stream:
+        if stdout_chunk:
+            dest_process.stdin.write(stdout_chunk)
+
+        if stderr_chunk:
+            source_stderr += stderr_chunk.decode()
+
+    # Wait for restic to finish
     stdout, stderr = dest_process.communicate()
 
     # Ensure both processes exited with code 0
-    source_exit, dest_exit = source_process.poll(), dest_process.poll()
+    source_exit = client.api.exec_inspect(exec_id).get("ExitCode")
-    exit_code = 0 if (source_exit == 0 and dest_exit == 0) else 1
+    dest_exit = dest_process.poll()
+    exit_code = source_exit or dest_exit
 
     if stdout:
         commands.log_std('stdout', stdout, logging.DEBUG if exit_code == 0 else logging.ERROR)
 
+    if source_stderr:
+        commands.log_std(f'stderr ({source_command[0]})', source_stderr, logging.ERROR)
+
     if stderr:
-        commands.log_std('stderr', stderr, logging.ERROR)
+        commands.log_std('stderr (restic)', stderr, logging.ERROR)
 
     return exit_code
 

src/restic_compose_backup/utils.py

@@ -3,6 +3,7 @@ import logging
 from typing import List, TYPE_CHECKING
 from contextlib import contextmanager
 import docker
+from docker import DockerClient
 
 if TYPE_CHECKING:
     from restic_compose_backup.containers import Container
@@ -12,7 +13,7 @@ logger = logging.getLogger(__name__)
 TRUE_VALUES = ['1', 'true', 'True', True, 1]
 
 
-def docker_client():
+def docker_client() -> DockerClient:
     """
     Create a docker client from the following environment variables::
 

src/setup.py

@@ -3,12 +3,15 @@ from setuptools import setup, find_namespace_packages
 setup(
     name="restic-compose-backup",
     url="https://github.com/ZettaIO/restic-compose-backup",
-    version="0.6.0",
+    version="0.7.1",
     author="Einar Forselv",
     author_email="eforselv@gmail.com",
-    packages=find_namespace_packages(include=['restic_compose_backup']),
+    packages=find_namespace_packages(include=[
+        'restic_compose_backup',
+        'restic_compose_backup.*',
+    ]),
     install_requires=[
-        'docker==4.1.*',
+        'docker~=6.1.3',
     ],
     entry_points={'console_scripts': [
         'restic-compose-backup = restic_compose_backup.cli:main',